Research Description
Human fungal infections are a growing, but understudied problem that kill an estimated 2.1 million people worldwide each year. The primary site of many of these life-threatening infections is the lung, as fungi are exceptional spore producers and human exposure by inhalation is unavoidable. The burden of these infections is predicted to increase considerably due to an increased number of susceptible patients and the emergence of new fungal diseases due to climate change. Despite this, we still have a limited understanding of how these pathogens cause disease, adapt to the host, and evade antifungal treatment.
Research in my group uses genomics, microbiome science, and laboratory experiments and is concentrated on (i) creating cutting-edge bioinformatic tools that capture the pangenomic diversity of eukaryotic pathogens (ii) investigating how fungal pathogens interact with the respiratory microbiome and adapt during chronic infection of the lung and (iii) using metagenomics and high throughput genetic screening to understand how environmental interactions shape human virulence in fungi.
For additional information about the group’s activities, please visit their external site at https://barber-lab.com.
Funding Logos





Project leader
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Prof. Dr. Amelia E. Barber
Principal Investigator
Team
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Matthias Hauptman
Senior Scientist -

Kodwo Appoh Odum
Post-Doc -

Bruno Steimbrüch
Post-Doc -

Marion Perrier
PhD-student -

Nicole Ang
PhD-student -

Kristine Hagens
Lab technician -

Nina Budriks
Lab technician -

Handan Müftüoglu
Assistance
Publications
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Nature Communications
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Population structure in a fungal human pathogen is potentially linked to pathogenicity
Hatmaker AE, Barber AE, Drott MT, Sauters TJC, Gumilang AC, Alastruey-Izquierdo A, Garcia-Hermoso D, Eagan JL, Keller NP, Kontoyiannis DP, Kurzai O, Rokas A
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The Lancet Microbe
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Genomic reconstruction of an azole-resistant Candida parapsilosis outbreak and the creation of a multilocus sequence typing scheme
Brassington P, Klefisch F-R, Graf B, Pfüller R, Kurzai O, Walther G, Barber AE
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Cell Reports
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A global survey of host, aquatic, and soil microbiomes reveals shared abundance and genomic features between bacterial and fungal generalists
Loos D, Pereira A, Dutilh BE, Barber AE, Panagiotou G
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Nature Microbiology
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Aspergillus fumigatus pan-genome analysis identifies genetic variants associated with human infection
Barber AE, Sae-Ong T, Kang K, Seelbinder B, Li J, Walther G, Panagiotou G, Kurzai O
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mBio
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Effects of agricultural fungicide use on Aspergillus fumigatus abundance, antifungal susceptibility, and population structure
Barber AE, Riedel J, Sae-Ong T, Kang K, Brabetz W, Panagiotou G, Deising H, Kurzai O
