Experimental Mycology and Microbiome Research

Prof. Dr. Amelia E. Barber

Fungal infections are a major and growing threat to human health. Our goal is to uncover the evolutionary and molecular mechanisms that enable fungal pathogens to cause disease and resist treatment. By leveraging genomics, microbiome science, and experimental biology, we aim to advance new strategies for diagnosis, prevention, and therapy.

Prof. Dr. Amelia E. Barber

Human fungal infections are a growing, but understudied problem that kill an estimated 2.1 million people worldwide each year. The primary site of many of these life-threatening infections is the lung, as fungi are exceptional spore producers and human exposure by inhalation is unavoidable. The burden of these infections is predicted to increase considerably due to an increased number of susceptible patients and the emergence of new fungal diseases due to climate change. Despite this, we still have a limited understanding of how these pathogens cause disease, adapt to the host, and evade antifungal treatment. 

Research in my group uses genomics, microbiome science, and laboratory experiments and is concentrated on (i) creating cutting-edge bioinformatic tools that capture the pangenomic diversity of eukaryotic pathogens (ii) investigating how fungal pathogens interact with the respiratory microbiome and adapt during chronic infection of the lung and (iii) using metagenomics and high throughput genetic screening to understand how environmental interactions shape human virulence in fungi. 

For additional information about the group’s activities, please visit their external site at https://barber-lab.com.


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  • Nature Communications

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    Population structure in a fungal human pathogen is potentially linked to pathogenicity

    Hatmaker AE, Barber AE, Drott MT, Sauters TJC, Gumilang AC, Alastruey-Izquierdo A, Garcia-Hermoso D, Eagan JL, Keller NP, Kontoyiannis DP, Kurzai O, Rokas A

  • The Lancet Microbe

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    Genomic reconstruction of an azole-resistant Candida parapsilosis outbreak and the creation of a multilocus sequence typing scheme

    Brassington P, Klefisch F-R, Graf B, Pfüller R, Kurzai O, Walther G, Barber AE

  • Cell Reports

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    A global survey of host, aquatic, and soil microbiomes reveals shared abundance and genomic features between bacterial and fungal generalists

    Loos D, Pereira A, Dutilh BE, Barber AE, Panagiotou G

  • Nature Microbiology

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    Aspergillus fumigatus pan-genome analysis identifies genetic variants associated with human infection

    Barber AE, Sae-Ong T, Kang K, Seelbinder B, Li J, Walther G, Panagiotou G, Kurzai O

  • mBio

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    Effects of agricultural fungicide use on Aspergillus fumigatus abundance, antifungal susceptibility, and population structure

    Barber AE, Riedel J, Sae-Ong T, Kang K, Brabetz W, Panagiotou G, Deising H, Kurzai O