Publications

Publications

Since 2021, we have been conducting research and publishing work in various fields. Find out more:

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  • Nature Communications

    ·

    Author Correction: Metabolic modeling reveals a multi-level deregulation of host-microbiome metabolic networks in IBD

    Taubenheim J, Kadibalban AS, Zimmermann J, Taubenheim C, Tran F, Schreiber S, Rosenstiel P, Aden K, Kaleta C.

    DOI:

    https://doi.org/10.1038/s41467-025-64877-y

  • Computational and Structural Biotechnology Journal

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    Metabolic modeling of host-microbe interactions

    Srinak N, Krüger F, Kaleta C, Taubenheim J

    DOI:

    https://doi.org/10.1016/j.csbj.2025.10.006

  • Nature Communications

    ·

    Metabolic modeling reveals a multi-level deregulation of host-microbiome metabolic networks in IBD

    Taubenheim J, Kadibalban AS, Zimmermann J, Taubenheim C, Tran F, Schreiber S, Rosenstiel P, Aden K, Kaleta C

    DOI:

    https://doi.org/10.1038/s41467-025-60233-2

  • Molecular Systems Biology

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    Metabolic modelling reveals increased autonomy and antagonism in type 2 diabetic gut microbiota

    Kadibalban AS, Künstner A, Schröder T, Zauleck J, Witt O, Marinos G, Kaleta C.

    DOI:

    https://doi.org/10.1038/s44320-025-00100-w

  • Nature Microbiology

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    Metabolic modelling reveals the aging-associated decline of host–microbiome metabolic interactions in mice

    Best L, Dost T, Esser D, Flor S, Gamarra AM, Haase M, Kadibalban AS, Marinos G, Walker A, Zimmermann J, Simon R, Schmidt S, Taubenheim J, Künzel S, Häsler R, Franzenburg S, Groth M, Waschina S, Rosenstiel P, Sommer F, Witte OW, Schmitt-Kopplin P, Baines JF, Frahm C, Kaleta C.

    DOI:

    https://doi.org/10.1038/s41564-025-01959-z

  • Nature Microbiology

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    Metabolic modelling reveals the aging-associated decline of host–microbiome metabolic interactions in mice

    Best, L., Dost, T., Esser, D., Flor, S., Gamarra, A. M., Haase, M., Kadibalban, A. S., Marinos, G., Walker, A., Zimmermann, J., Simon, R., Schmidt, S., Taubenheim, J., Künzel, S., Häsler, R., Franzenburg, S., Groth, M., Waschina, S., Rosenstiel, P., … Kaleta, C

    DOI:

    https://doi.org/10.1038/s41564-025-01959-z

  • Nature Microbiology

    ·

    Metabolic modelling reveals the aging-associated decline of host–microbiome metabolic interactions in mice

    Best L, Dost T, Esser D, Flor S, Haase M, Kadibalban AS, Marinos G, Walker A, Zimmermann J, Simon R, Schmidt S, Taubenheim J, Künzel S, Häsler R, Groth M, Waschina S, Witte OW, Schmitt-Kopplin P, Baines JF, Frahm C, Kaleta C

    DOI:

    https://doi.org/10.1038/s41564-025-01959-z

  • Biorxiv

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    Metabolic modelling reveals increased autonomy and antagonism in type 2 diabetic gut microbiota

    Kadibalban S, Künstner A, Schröder T, Zauleck J, Witt O, Marinos G, Kaleta C

    DOI:

    https://doi.org/10.1101/2024.07.31.605966

  • Nature Communications

    ·

    Nonlinear DNA methylation trajectories in aging male mice

    Olecka M, van Bömmel A, Best L, Haase M, Foerste S, Riege K, Dost T, Flor S, Witte OW, Franzenburg S, Groth M, von Eyss B, Kaleta C, Frahm C, Hoffmann S

    DOI:

    https://doi.org/10.1038/s41467-024-47316-2

  • Microbiology Spectrum

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    Metabolic model predictions enable targeted microbiome manipulation through precision prebiotics

    Marinos G, Hamerich IK, Debray R, Obeng N, Petersen C, Taubenheim J, Zimmermann J, Blackburn D, Samuel BS, Dierking K, Franke A, Laudes M, Waschina S, Schulenburg H, Kaleta C

    DOI:

    https://doi.org/10.1128/spectrum.01144-23