Publications

Publications

Since 2021, we have been conducting research and publishing work in various fields. Find out more:

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  • preprint

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    Industrialization drives convergent microbial and physiological shifts in the human metaorganism

    Poyet M, Rühlemann M, Schaan AP, Ma Y, Moitinho-Silva L, Wacker EM, Jebens H, Patel L, Nguyen LTT, Zimmer A, Plichta D, McDonald D, Stevens C, Agyei A, Afihene MY, Asibey SO, Awuku YA, Badiane AS, Ching LS, Corzett C, Deme A, Dominguez-Rodrigo M, Duah A, Fezeu A, Froment A, Gibbons S, Girard C, Hooker J, Ibrahim F, Iqaluk D, Juimo V, Kettunen P, Lafosse S, Lango-Yaya E, Lehtimäki J, Lim YAL, Mabulla A, Mahachai V, Mohamed RS, Moniz K, Mwikarago IE, Nartey YA, Ndiaye D, Noel M, Onyekwere C, Pin TM, Plymoth A, Roberts L, Ruokolainen L, Rusine J, Segurel L, Shapiro BJ, Sigwazi S, Sistiaga A, Valles K, Vatanen T, Vilaichone R, Rosenstiel P, Baines J, Franke A, Ellinghaus D, Knight R, Daly M, Xavier RJ, Alm EJ, Groussin M

    DOI:

    https://doi.org/10.1101/2025.10.20.683358

  • International Journal of Eating Disorders

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    The Influence of Omega-3 Fatty Acids and Probiotics on Hippocampal Inflammation and Glial Cells in a Chronic Anorexia Nervosa Rat Model

    Thelen AC, Andreani N, Korten NM, Neumann M, Verspohl V, van Egmond M, Kneisel L, Voelz C, Blischke L, Baines JF, Baier J, Schumacher J, Kiessling F, Herpertz-Dahlmann B, Beyer C, Keller L, Seitz J, Trinh S

    DOI:

    https://doi.org/10.1002/eat.24574

  • Nature Communications

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    Author Correction: Metabolic modeling reveals a multi-level deregulation of host-microbiome metabolic networks in IBD

    Taubenheim J, Kadibalban AS, Zimmermann J, Taubenheim C, Tran F, Schreiber S, Rosenstiel P, Aden K, Kaleta C.

    DOI:

    https://doi.org/10.1038/s41467-025-64877-y

  • Computational and Structural Biotechnology Journal

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    Metabolic modeling of host-microbe interactions

    Srinak N, Krüger F, Kaleta C, Taubenheim J

    DOI:

    https://doi.org/10.1016/j.csbj.2025.10.006

  • Frontiers in Microbiology

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    Comparison of 16S ribosomal RNA hypervariable regions in microbiome studies of anorexia nervosa

    Sharma A, Andreani NA, Keller L, Herpertz-Dahlmann B, Seitz J, Baines JF, Dempfle A

    DOI:

    https://doi.org/10.3389/fmicb.2025.1665847

  • Nature Communications

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    Population structure in a fungal human pathogen is potentially linked to pathogenicity

    Hatmaker AE, Barber AE, Drott MT, Sauters TJC, Gumilang AC, Alastruey-Izquierdo A, Garcia-Hermoso D, Eagan JL, Keller NP, Kontoyiannis DP, Kurzai O, Rokas A

    DOI:

    https://doi.org/10.1038/s41467-025-62777-9

  • Scientific Reports

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    Gut microbiota profiles of peninsular Malaysian populations are associated with urbanization and lifestyle

    Jamaluddin NF, Brovkina O, Rashid NN, Al-Maleki AR, Lim YAL, Tan MP, Lee SC, Duvallet C, Corzett CH, Alm E, Groussin M, Poyet M, Ibrahim F

    DOI:

    https://doi.org/10.1038/s41598-025-07117-z

  • Nature Communications

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    Metabolic modeling reveals a multi-level deregulation of host-microbiome metabolic networks in IBD

    Taubenheim J, Kadibalban AS, Zimmermann J, Taubenheim C, Tran F, Schreiber S, Rosenstiel P, Aden K, Kaleta C

    DOI:

    https://doi.org/10.1038/s41467-025-60233-2

  • International Journal of Eating Disorders

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    Antibiotic-Induced Microbial Dysbiosis Worsened Outcomes in the Activity-Based Anorexia Model

    Kooij KL, Andreani NA, Keller L, Trinh S, van der Gun L, Hak J, Garner K, Luijendijk M, Drost L, Danner U, van Elburg A, Dempfle A, Seitz J, Herpertz-Dahlmann B, Baines JF, Adan RAH

    DOI:

    https://doi.org/10.1002/eat.24452

  • Proteomics

    ·

    Top-Down Proteomics: Why and When?

    Kaulich PT, Tholey A

    DOI:

    https://doi.org/10.1002/pmic.202400338