Publications

Publications

Since 2021, we have been conducting research and publishing work in various fields. Find out more:

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  • Molecular Systems Biology

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    Metabolic modelling reveals increased autonomy and antagonism in type 2 diabetic gut microbiota

    Kadibalban AS, Künstner A, Schröder T, Zauleck J, Witt O, Marinos G, Kaleta C.

    DOI:

    https://doi.org/10.1038/s44320-025-00100-w

  • Microbiome

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    Life-long microbiome rejuvenation improves intestinal barrier function and inflammaging in mice

    Sommer F, Bernardes JP, Best L, Sommer N, Hamm J, Messner B, López-Agudelo VA, Fazio A, Marinos G, Kadibalban AS, Ito G, Falk-Paulsen M, Kaleta C, Rosenstiel P

    DOI:

    https://doi.org/10.1186/s40168-025-02089-8

  • Nature Microbiology

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    Metabolic modelling reveals the aging-associated decline of host–microbiome metabolic interactions in mice

    Best L, Dost T, Esser D, Flor S, Gamarra AM, Haase M, Kadibalban AS, Marinos G, Walker A, Zimmermann J, Simon R, Schmidt S, Taubenheim J, Künzel S, Häsler R, Franzenburg S, Groth M, Waschina S, Rosenstiel P, Sommer F, Witte OW, Schmitt-Kopplin P, Baines JF, Frahm C, Kaleta C.

    DOI:

    https://doi.org/10.1038/s41564-025-01959-z

  • Nature Microbiology

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    Metabolic modelling reveals the aging-associated decline of host–microbiome metabolic interactions in mice

    Best, L., Dost, T., Esser, D., Flor, S., Gamarra, A. M., Haase, M., Kadibalban, A. S., Marinos, G., Walker, A., Zimmermann, J., Simon, R., Schmidt, S., Taubenheim, J., Künzel, S., Häsler, R., Franzenburg, S., Groth, M., Waschina, S., Rosenstiel, P., … Kaleta, C

    DOI:

    https://doi.org/10.1038/s41564-025-01959-z

  • Nature Microbiology

    ·

    Metabolic modelling reveals the aging-associated decline of host–microbiome metabolic interactions in mice

    Best L, Dost T, Esser D, Flor S, Haase M, Kadibalban AS, Marinos G, Walker A, Zimmermann J, Simon R, Schmidt S, Taubenheim J, Künzel S, Häsler R, Groth M, Waschina S, Witte OW, Schmitt-Kopplin P, Baines JF, Frahm C, Kaleta C

    DOI:

    https://doi.org/10.1038/s41564-025-01959-z

  • Cancer Communications (Lond)

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    Deletion of epithelial HKDC1 decelerates cellular proliferation and impairs mitochondrial function of tumorous epithelial cells thereby protecting from intestinal carcinogenesis

    Järke L, Weber-Stiehl S, Shima K, Moors KA, Genth J, Schuran FA, Best L, Tschurtschenthaler M, Flemer B, Lüschen S, Röcken C, Tholey A, Kaleta C, Rupp J, Rosenstiel P, Sommer F

    DOI:

    https://doi.org/10.1002/cac2.70022

  • Cancer Communications (Lond)

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    Deletion of epithelial HKDC1 decelerates cellular proliferation and impairs mitochondrial function of tumorous epithelial cells thereby protecting from intestinal carcinogenesis

    Järke L, Weber-Stiehl S, Shima K, Moors KA, Genth J, Schuran FA, Best L, Tschurtschenthaler M, Flemer B, Lüschen S, Röcken C, Tholey A, Kaleta C, Rupp J, Rosenstiel P, Sommer F

    DOI:

    https://doi.org/10.1002/cac2.70022

  • Nucleic Acids Research

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    Phenotypic screens identify SCAF1 as critical activator of RNAPII elongation and global transcription

    Bhandare P, Narain A, Hofstetter J, Rummel T, Wenzel J, Schülein-Völk C, Lamer S, Eilers U, Schlosser A, Eilers M, Erhard F, Wolf E

    DOI:

    https://doi.org/10.1093/nar/gkae1219

  • The Lancet Microbe

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    Genomic reconstruction of an azole-resistant Candida parapsilosis outbreak and the creation of a multilocus sequence typing scheme

    Brassington P, Klefisch F-R, Graf B, Pfüller R, Kurzai O, Walther G, Barber AE

    DOI:

    https://doi.org/10.1016/j.lanmic.2024.07.012

  • BMC Medicine

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    Hexokinase 2 expression in apical enterocytes correlates with inflammation severity in patients with inflammatory bowel disease

    Weber-Stiehl S, Taubenheim J, Järke L, Röcken C, Schreiber S, Aden K, Kaleta C, Rosenstiel P, Sommer F

    DOI:

    https://doi.org/10.1186/s12916-024-03710-7